Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs2291780 chr5:154336553 C/G 0 489 30.3 32.85 4.87 KM Plot
PRAD rs2292461 chr4:7058473 C/T 0.000172 494 22.87 31.37 31.03 KM Plot
PRAD rs2294531 chr1:6711976 A/C 0.000171 485 29.23 31.37 32.23 KM Plot
PRAD rs2294532 chr1:6694927 C/T 9.16E-5 473 30.37 31.27 29.7 KM Plot
PRAD rs2304673 chr2:239185922 G/T 5.45E-6 494 5.93 30.73 31.07 KM Plot
PRAD rs2310392 chr4:187065924 A/G 2.49E-6 485 32.4 28.3 31.27 KM Plot
PRAD rs2321816 chr4:165647320 C/T 5.53E-5 494 44.32 32.9 30.77 KM Plot
PRAD rs2330917 chr7:43667576 C/T 0.000187 486 16.98 29.52 32.03 KM Plot
PRAD rs2330919 chr7:43673567 G/T 0.000182 487 16.98 29.52 32.13 KM Plot
PRAD rs2362916 chr1:202763850 C/T 7.07E-6 490 30.8 29.17 37.17 KM Plot
PRAD rs2377728 chr1:31706636 G/A 6.5E-5 476 30.87 32 22.85 KM Plot
PRAD rs2388528 chr10:131805763 G/A 1.55E-6 481 31.27 30.08 28.8 KM Plot
PRAD rs2401414 chr22:18439392 G/A 9.6E-7 488 30.8 32.22 26.2 KM Plot
PRAD rs2403890 chr11:24210635 C/T 3.2E-8 486 30.8 31.4 20.93 KM Plot
PRAD rs2414997 chr15:68615519 C/T 0.00019 490 19.83 32.05 30.77 KM Plot